PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00436g06007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 346aa MW: 37469.4 Da PI: 7.8653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00436g06007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Niben101Scf00436g06007.1 130 YECKTCNRTFPSFQALGGHRASH 152 99**********99999998887 PP
2	zf-C2H2	13.4	0.00023	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Niben101Scf00436g06007.1 240 HECSICGSEFSSGQALGGHMRKH 262 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.9E-13	129	154	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.55E-8	129	152	No hit	No description
SMART	SM00355	0.052	130	152	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.658	130	157	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	132	152	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.55E-8	235	262	No hit	No description
SMART	SM00355	0.017	240	262	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	8.0E-11	240	263	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.91	240	267	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
METSQDFPER SYAFKGKRSK RSRPSSPLNI AGTMVTSSSS AVGGSDDGGG GDVYYSSAII 60 QYSPTTSTTQ ISTSCTSEED EDMANCLILL AQSGRRKVQV VTEVKKEKIS SRKFTEMVNT 120 TTGKAGFFVY ECKTCNRTFP SFQALGGHRA SHKRPKTIVE EKKSVTITAT ATATASASTA 180 MATASAGAHS LVENHDDHHG KNDQEEGRLN KLNASLSIQI VNNNKGINFH SNSNSKPKIH 240 ECSICGSEFS SGQALGGHMR KHKPPTTTTA TNSTKVSTNI HIETISNISE SSHDDVGANY 300 KEEEKSTRNF LSLDLNLPAP PEDDRRETKF EQSLVFSAAP LVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

METSQDFPER SYAFKGKRSK RSRPSSPLNI AGTMVTSSSS AVGGSDDGGG GDVYYSSAII  60
QYSPTTSTTQ ISTSCTSEED EDMANCLILL AQSGRRKVQV VTEVKKEKIS SRKFTEMVNT  120
TTGKAGFFVY ECKTCNRTFP SFQALGGHRA SHKRPKTIVE EKKSVTITAT ATATASASTA  180
MATASAGAHS LVENHDDHHG KNDQEEGRLN KLNASLSIQI VNNNKGINFH SNSNSKPKIH  240
ECSICGSEFS SGQALGGHMR KHKPPTTTTA TNSTKVSTNI HIETISNISE SSHDDVGANY  300
KEEEKSTRNF LSLDLNLPAP PEDDRRETKF EQSLVFSAAP LVDCHY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258773.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A314LFH2	0.0	A0A314LFH2_NICAT; Zinc finger protein zat5
STRING	XP_009766818.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	7e-47	C2H2 family protein