PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00021g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 117aa    MW: 13252 Da    PI: 10.3804
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00021g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.3e-312074155
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                              kprl+Wtp LH+rFv+ v+qLGG++kAtPk+++ +m+++gLtl+h+kSHLQkYRl
  Niben101Scf00021g01007.1 20 KPRLKWTPLLHQRFVDSVTQLGGADKATPKSLKSVMNIHGLTLDHLKSHLQKYRL 74
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-281778IPR009057Homeodomain-like
SuperFamilySSF466892.15E-141976IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-232075IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MGLQNVESKD MRLVLSRDAK PRLKWTPLLH QRFVDSVTQL GGADKATPKS LKSVMNIHGL  60
TLDHLKSHLQ KYRLVKSQLA QSDHKNRQEN NLGSAIEHDR GKKDENSSDA AQIQMNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-191978160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783076.18e-67PREDICTED: uncharacterized protein LOC104231721
RefseqXP_016504182.18e-67PREDICTED: uncharacterized protein LOC107822184
SwissprotQ9SQQ95e-28PHL9_ARATH; Myb-related protein 2
TrEMBLA0A1S4CSD32e-65A0A1S4CSD3_TOBAC; uncharacterized protein LOC107822184
TrEMBLA0A1U7X0882e-65A0A1U7X088_NICSY; uncharacterized protein LOC104231721
STRINGXP_009783076.13e-66(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.12e-30G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]