PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg15076g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 128aa MW: 14716.9 Da PI: 9.8994 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.2e-13 | 3 | 55 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er+RR+++N +++Lr+llP+ + ++kKls e++ + eYI +L Niben101Ctg15076g00003.1 3 KKLSHNASERNRRKKMNFLYSTLRSLLPPtN--HQKKKLSFPETVCYVEEYIPEL 55 6789*************************66..68888**999999999999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.662 | 2 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-11 | 3 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.58E-7 | 3 | 60 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-14 | 3 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-10 | 3 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-4 | 8 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MAKKLSHNAS ERNRRKKMNF LYSTLRSLLP PTNHQKKKLS FPETVCYVEE YIPELKKEIE 60 RLSQTKDLLL SKKDGSLVEP NNNQRNTTSS ASISTTPLCN GQIQGTNEME IQSLKTKLLV 120 MYEENQIS |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264786.1 | 2e-56 | PREDICTED: transcription factor ORG2-like isoform X2 | ||||
Swissprot | Q9FYE6 | 4e-19 | BH101_ARATH; Transcription factor bHLH101 | ||||
TrEMBL | A0A1S3YVA5 | 1e-52 | A0A1S3YVA5_TOBAC; transcription factor ORG2-like | ||||
TrEMBL | A0A1U7WL74 | 2e-49 | A0A1U7WL74_NICSY; uncharacterized protein LOC104228545 | ||||
STRING | XP_009779323.1 | 4e-50 | (Nicotiana sylvestris) | ||||
STRING | XP_009600422.1 | 1e-51 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04150.1 | 3e-20 | bHLH family protein |