PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9783_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 328aa    MW: 36712 Da    PI: 8.9113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9783_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12151197455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Neem_9783_f_4 151 DHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 197
                    699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10151197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17152212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-13152201No hitNo description
SMARTSM003531.0E-14153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEISSIKGFP EPAMEDCSFM SQWQTNSIED FNVLPLAAAA FGENLQQSYT LPPFNIRNSL  60
ENSHFGIDRP PKQIKTNTWN SSQTGFSPNT LSSVSMNQMG ILKPKVEAGC PKSTSDMFAS  120
QGSFGNQNFV FKACQGAKRI SPGNRLSHAQ DHIIAERKRR EKLSQRFIAL SAIVPGLKKM  180
DKASVLGDAI KYLKQLQEKV KTLEEQTRKK TMESVVFVKK SQLFAEGENS TSDENSSNVP  240
LNEALPEIEA RICDKNVLIR VHFEKRKGVF EKTVAEIEKL HLTIINSSVM TFGNSALDVT  300
IIAQMDEDFN MTVKDLVRNL HSAVRLFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14151200857Transcription factor MYC2
5gnj_B1e-14151200857Transcription factor MYC2
5gnj_E1e-14151200857Transcription factor MYC2
5gnj_F1e-14151200857Transcription factor MYC2
5gnj_G1e-14151200857Transcription factor MYC2
5gnj_I1e-14151200857Transcription factor MYC2
5gnj_M1e-14151200857Transcription factor MYC2
5gnj_N1e-14151200857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRE
2156161RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.11e-165transcription factor bHLH25-like
RefseqXP_015388301.11e-165transcription factor bHLH25-like
TrEMBLA0A067FXL51e-164A0A067FXL5_CITSI; Uncharacterized protein
STRINGXP_006486799.11e-164(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-69bHLH family protein