PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_859_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 642aa    MW: 72465.4 Da    PI: 7.5792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_859_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.9e-1170121255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +  hn+ Er RR+++N   + Lr++lP a   + kKls  +++ + v+Y+ +Lq
  Neem_859_f_1  70 KLYHNASERDRRKKMNGLCSALRSVLPDA--DQTKKLSIPATVSRMVKYLPELQ 121
                   567*************************6..48888**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.86E-1066125No hitNo description
PROSITE profilePS5088813.29468120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-1469139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-870121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1270138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-974126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.80.10.103.9E-28246416IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520585.78E-37263575IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.8E-30438639IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.59E-8591639IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MCALTPPVFA NLGWPSKQYH HQLQQQEDYY YSYRETVDHD RQYLITQPQT QLDRCASFSA  60
NTGDDSVAKK LYHNASERDR RKKMNGLCSA LRSVLPDADQ TKKLSIPATV SRMVKYLPEL  120
QQQVKRLEEK KEELLTKIAT QHDDFINIHQ RKQEQVGVGS NVFSGSASRL AETEILIHIS  180
TYKSHIYNYN CPLLLSEILL HLQDQDPSLL LLSASSFESS GGRVFYTLHL QRRRDKLYSS  240
SKKALLTGQL PNLFLNLSGC AKRSLENLNL GLNKLGGSLP DITEFSALRE LDISYNRLDG  300
SFPEKFRQPS SLLRTLHLQG NKLRGSLPNL SVFPWLRSLN LDANRLNGTV PDGIGQLSQL  360
EELKLYSNSL QGMITEAQMS NLSKLKIMDF SCNSIQFNFS PEWFPPFQSE IINLPNCKLG  420
PHFPKWLQGK IPDSMDSNDC SIDSIHLRNN SFSGELPSFL KYFTDLKVID AGNNSFSGII  480
TEWIADKHSL PSLSILSLRS NKFYGNLSEN LCNLHSLQLL DFSDNNNSGT IPKCLGNLKA  540
MAEIESSSAI IENIYPFAVY YESIDYTNFL DNALLVWKRS DSEYKKIHGL LKSIDLSSNK  600
LSRQIPEEIT NLAGLISLNL SSNTLIGPIP PSIDQLRLLN SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mna_A6e-2623363974642LRR receptor-like serine/threonine-protein kinase FLS2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470464.11e-101receptor-like protein EIX2
STRINGXP_006470464.11e-100(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-32bHLH family protein