PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_796_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 91aa    MW: 10329.6 Da    PI: 9.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_796_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-1119591454
                  HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  d+iN+  ++L++llP++ +++s K+s a +L+++++YI+sL
  Neem_796_f_4 19 DQINDLVSKLQQLLPELRNNRSDKVSAAKVLQETCNYIRSL 59
                  79**************889********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-10478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.29559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-81959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-111977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-51963No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRSRQ SGSSRITDDQ INDLVSKLQQ LLPELRNNRS DKVSAAKVLQ ETCNYIRSLH  60
REVDDLSERL SELLATTDTA QAAIIRSLLM Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439625.13e-57transcription factor PRE6
RefseqXP_006476632.13e-57transcription factor PRE6
SwissprotF4JCN92e-41PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A067GBS67e-56A0A067GBS6_CITSI; Uncharacterized protein
TrEMBLA0A2H5NG187e-56A0A2H5NG18_CITUN; Uncharacterized protein
TrEMBLV4TMG97e-56V4TMG9_9ROSI; Uncharacterized protein
STRINGXP_006476632.11e-56(Citrus sinensis)
STRINGXP_006439625.11e-56(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.11e-39activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]