PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7766_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 450aa MW: 50025.3 Da PI: 4.6865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.6 | 6.6e-29 | 45 | 174 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +G rF+Ptde l +yL kv+g+ +++ ikevd+yk+eP+ L +++ ++ ++yf++ + ky++g++ r + +g+Wk+tg++ v+ ++ Neem_7766_f_1 45 VGTRFRPTDEILARHYLVGKVSGRAdGPIFPLIKEVDVYKCEPKLLSrDAHNFGDGNMYFYTVLKMKYHNGTNVDRLAGNGFWKKTGNSSYVKGED 140 79*********************996667778**************94455558889********************9****************** PP NAM 97 gelvglkktLvfykg..rapkgektdWvmheyrl 128 g + +k+ L++y++ + + +kt+W+m+e+++ Neem_7766_f_1 141 GVPIATKTPLAYYTNgpKPGECTKTQWLMKEFTI 174 *************6534666778*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.669 | 43 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-13 | 45 | 173 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-31 | 45 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MASFSTTAAE VSSQSTAVEE NDSVVNTAPG IYSPINSESL LTDVVGTRFR PTDEILARHY 60 LVGKVSGRAD GPIFPLIKEV DVYKCEPKLL SRDAHNFGDG NMYFYTVLKM KYHNGTNVDR 120 LAGNGFWKKT GNSSYVKGED GVPIATKTPL AYYTNGPKPG ECTKTQWLMK EFTIKGQIAE 180 KYHKKLALCV IYLHDRKRKQ RDQSDENVLL NDIVGGSFEN LASDSYCDRR NFIMPSTENP 240 DSPRKRHRPS NPDFHVQDQG SFTPEFNSSS NPDATHESFP AGPIQSANSY QNMLNTVMES 300 EGALATERNE HIPYNYPSAD FGDLYQPQHQ LSELSTENLD FHQNQDISNP GFNSSSNPSA 360 TGEILPEVTI QSTNSNQNLL NTVMESQVAT NTHGNILNYQ SAVLDVFNGC DLPQYPGEYQ 420 LPEDLRCLLY ENELPPDVSE DPGIAQLPVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-17 | 30 | 174 | 2 | 140 | Stress-induced transcription factor NAC1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21284 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-20 | NAC domain containing protein 35 |