PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7766_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 450aa MW: 50025.3 Da PI: 4.6865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7766_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.6	6.6e-29	45	174	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +G rF+Ptde l +yL kv+g+ +++ ikevd+yk+eP+ L +++ ++ ++yf++ + ky++g++ r + +g+Wk+tg++ v+ ++ Neem_7766_f_1 45 VGTRFRPTDEILARHYLVGKVSGRAdGPIFPLIKEVDVYKCEPKLLSrDAHNFGDGNMYFYTVLKMKYHNGTNVDRLAGNGFWKKTGNSSYVKGED 140 79*******************996667778**********94455558889****************9************** PP NAM 97 gelvglkktLvfykg..rapkgektdWvmheyrl 128 g + +k+ L++y++ + + +kt+W+m+e+++ Neem_7766_f_1 141 GVPIATKTPLAYYTNgpKPGECTKTQWLMKEFTI 174 *********6534666778*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.669	43	194	IPR003441	NAC domain
Pfam	PF02365	3.2E-13	45	173	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-31	45	193	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MASFSTTAAE VSSQSTAVEE NDSVVNTAPG IYSPINSESL LTDVVGTRFR PTDEILARHY 60 LVGKVSGRAD GPIFPLIKEV DVYKCEPKLL SRDAHNFGDG NMYFYTVLKM KYHNGTNVDR 120 LAGNGFWKKT GNSSYVKGED GVPIATKTPL AYYTNGPKPG ECTKTQWLMK EFTIKGQIAE 180 KYHKKLALCV IYLHDRKRKQ RDQSDENVLL NDIVGGSFEN LASDSYCDRR NFIMPSTENP 240 DSPRKRHRPS NPDFHVQDQG SFTPEFNSSS NPDATHESFP AGPIQSANSY QNMLNTVMES 300 EGALATERNE HIPYNYPSAD FGDLYQPQHQ LSELSTENLD FHQNQDISNP GFNSSSNPSA 360 TGEILPEVTI QSTNSNQNLL NTVMESQVAT NTHGNILNYQ SAVLDVFNGC DLPQYPGEYQ 420 LPEDLRCLLY ENELPPDVSE DPGIAQLPVP

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MASFSTTAAE VSSQSTAVEE NDSVVNTAPG IYSPINSESL LTDVVGTRFR PTDEILARHY  60
LVGKVSGRAD GPIFPLIKEV DVYKCEPKLL SRDAHNFGDG NMYFYTVLKM KYHNGTNVDR  120
LAGNGFWKKT GNSSYVKGED GVPIATKTPL AYYTNGPKPG ECTKTQWLMK EFTIKGQIAE  180
KYHKKLALCV IYLHDRKRKQ RDQSDENVLL NDIVGGSFEN LASDSYCDRR NFIMPSTENP  240
DSPRKRHRPS NPDFHVQDQG SFTPEFNSSS NPDATHESFP AGPIQSANSY QNMLNTVMES  300
EGALATERNE HIPYNYPSAD FGDLYQPQHQ LSELSTENLD FHQNQDISNP GFNSSSNPSA  360
TGEILPEVTI QSTNSNQNLL NTVMESQVAT NTHGNILNYQ SAVLDVFNGC DLPQYPGEYQ  420
LPEDLRCLLY ENELPPDVSE DPGIAQLPVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-17	30	174	2	140	Stress-induced transcription factor NAC1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21284	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-20	NAC domain containing protein 35