PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7766_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 450aa    MW: 50025.3 Da    PI: 4.6865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7766_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.66.6e-29451743128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    +G rF+Ptde l  +yL  kv+g+   +++  ikevd+yk+eP+ L   +++ ++ ++yf++  + ky++g++  r + +g+Wk+tg++  v+ ++
  Neem_7766_f_1  45 VGTRFRPTDEILARHYLVGKVSGRAdGPIFPLIKEVDVYKCEPKLLSrDAHNFGDGNMYFYTVLKMKYHNGTNVDRLAGNGFWKKTGNSSYVKGED 140
                    79*********************996667778**************94455558889********************9****************** PP

            NAM  97 gelvglkktLvfykg..rapkgektdWvmheyrl 128
                    g  + +k+ L++y++  +  + +kt+W+m+e+++
  Neem_7766_f_1 141 GVPIATKTPLAYYTNgpKPGECTKTQWLMKEFTI 174
                    *************6534666778*********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.66943194IPR003441NAC domain
PfamPF023653.2E-1345173IPR003441NAC domain
SuperFamilySSF1019413.92E-3145193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MASFSTTAAE VSSQSTAVEE NDSVVNTAPG IYSPINSESL LTDVVGTRFR PTDEILARHY  60
LVGKVSGRAD GPIFPLIKEV DVYKCEPKLL SRDAHNFGDG NMYFYTVLKM KYHNGTNVDR  120
LAGNGFWKKT GNSSYVKGED GVPIATKTPL AYYTNGPKPG ECTKTQWLMK EFTIKGQIAE  180
KYHKKLALCV IYLHDRKRKQ RDQSDENVLL NDIVGGSFEN LASDSYCDRR NFIMPSTENP  240
DSPRKRHRPS NPDFHVQDQG SFTPEFNSSS NPDATHESFP AGPIQSANSY QNMLNTVMES  300
EGALATERNE HIPYNYPSAD FGDLYQPQHQ LSELSTENLD FHQNQDISNP GFNSSSNPSA  360
TGEILPEVTI QSTNSNQNLL NTVMESQVAT NTHGNILNYQ SAVLDVFNGC DLPQYPGEYQ  420
LPEDLRCLLY ENELPPDVSE DPGIAQLPVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-17301742140Stress-induced transcription factor NAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2128435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-20NAC domain containing protein 35