PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7660_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 101aa    MW: 11588.9 Da    PI: 8.1958
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7660_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101660344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+eE +++ +a + + ++   +W  +ar +g +++++++k ++
    Neem_7660_f_2 16 TWTAEENKRFERALAVYDKDtpdRWQNVARAVGGNKSPEEVKRHY 60
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.48964IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-41264IPR009057Homeodomain-like
SMARTSM007178.8E-101366IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-131572IPR009057Homeodomain-like
PfamPF002492.9E-81660IPR001005SANT/Myb domain
CDDcd001671.99E-71664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASSSLTSSR RSDQSTWTAE ENKRFERALA VYDKDTPDRW QNVARAVGGN KSPEEVKRHY  60
DRLVEDLMFI ESGQFPLPNY KTTSSGNCIG ITDGRRYMLY C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-32897287RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473515.12e-45protein RADIALIS-like 3
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H5NSE32e-40A0A2H5NSE3_CITUN; Uncharacterized protein
TrEMBLV4SKI72e-40V4SKI7_9ROSI; Uncharacterized protein
STRINGXP_006473515.19e-45(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-33RAD-like 6