PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7573_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 332aa    MW: 36281.3 Da    PI: 6.5036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7573_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000421952331255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Neem_7573_f_3 195 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 233
                    6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.23183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-5193237No hitNo description
Gene3DG3DSA:4.10.280.102.8E-7193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-10193246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGNPSWWSM HPPSHQQSSA LLSTSQSLFP SPYVLGSSLP LNSLPDNQEH QQSWSQLLLG  60
GGLSGDEDRF SASHFQPKKF ENWDEQIINL SPRVPVVDHV KQEVSQSNNL YIPGSREFQA  120
ASWPQIIPVN SPRSCVTTST LTTSILDFAH IEADRNNQQN PDHSYECNST APGGGACKKA  180
RVQPSSSGQP PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQGQIEALS  240
SPYLNTSSAN MRNQQCVQGD HINGTFPEDP GQLLNDTCRL KRKGAPNNQD DQDKPKDLRS  300
RGLCLVPVSC TLHVESENGA DYWAPALGGG GF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024222.21e-145PREDICTED: transcription factor bHLH68
SwissprotQ8S3D19e-73BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A061GIE41e-143A0A061GIE4_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGEOY268441e-144(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]