PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7285_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 26959.5 Da PI: 4.9318 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 123 | 144 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg+ F ++ H+r H Neem_7285_f_2 123 SCYVCGREFQSWKAVFGHMRAH 144 699*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MASPGKSPEK TPQETSRSRN VGSGFSPEHP TVPAGSANVS PTPQQQVEGG DTSLNVEQAA 60 VAGEVAVTQT PATENVEIPA ELPAEQGPHR KRERTETAGA SASGERKQKR KGELVEIPSK 120 SPSCYVCGRE FQSWKAVFGH MRAHKVGEER AASGAFPPPV FTPPGGSPER EQKALQEQLV 180 PTLLDIAQVL ARTQESATGS ASARPSGGEQ QIDLNVQTQE GSPAASAPAS PEKGGTKFDL 240 NRPPPDNGGD DEENAGGAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467184.1 | 4e-56 | uncharacterized protein LOC102610330 | ||||
Refseq | XP_024036150.1 | 4e-56 | uncharacterized protein LOC112096741 | ||||
STRING | XP_006467184.1 | 2e-55 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 5e-11 | C2H2 family protein |