PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_6870_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 38896.7 Da PI: 7.2012 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.8 | 4.9e-07 | 184 | 203 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+ksF+r nL+ H+ Neem_6870_f_4 184 FSCPVCTKSFNRYNNLQMHM 203 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.4e-05 | 268 | 290 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Neem_6870_f_4 268 FMCRKCGKPFAVKGDWRTHEKNC 290 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.554 | 184 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-6 | 184 | 203 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.25E-7 | 184 | 206 | No hit | No description |
SMART | SM00355 | 0.055 | 184 | 206 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 186 | 206 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 231 | 263 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.25E-7 | 263 | 288 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-5 | 264 | 288 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 72 | 268 | 288 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 294 | 317 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MTDPYSNLFT GWFNFKPLHP NYSHFSSYST PHTYTNNITS SNSLIFQTQN FPPPPPSSPP 60 LKEALPLINC LSPRRQLEED QQEISSSSTE EDKINSNKDE SLIFSSTAEA ADDDVDPETV 120 TVALHIGLPN PSSNLSSRIS PPVDVTADKE EVVNLASGYS LDRLNKGQYW IPTPSQILIG 180 PTQFSCPVCT KSFNRYNNLQ MHMWGHGSQY RKGPDSLRGT QPTAMLRLPC YCCTQGCKHN 240 IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKPFAVK GDWRTHEKNC GKIWYCICGS 300 DFKHKRSLKD HIKAFGHGHA AMGIECFEED DEPASEIEHD GDSSM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482890.1 | 1e-175 | zinc finger protein WIP2-like | ||||
Refseq | XP_024042271.1 | 1e-175 | zinc finger protein WIP2-like | ||||
Swissprot | Q9SVY1 | 1e-128 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A1S8ADE9 | 1e-174 | A0A1S8ADE9_CITLI; C2H2-type zinc finger family protein | ||||
STRING | XP_006482890.1 | 1e-175 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-132 | C2H2 family protein |
Publications ? help Back to Top | |||
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