PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6619_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 320aa    MW: 34977.6 Da    PI: 7.5976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6619_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13105148855
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er RR+++++ f++L  llP++     +K +K++i+ +Av YIk Lq
  Neem_6619_f_3 105 TERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVSYIKTLQ 148
                    6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1696167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.87297147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-10102144No hitNo description
Gene3DG3DSA:4.10.280.103.3E-15102159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10105148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.635244308IPR002912ACT domain
CDDcd048737.46E-4245278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSEEGEGAGG GGNESFLWEK RSWALSISDN SGGVSEDGIL LRKNPAPPMP PSNSNSPKVL  60
MDEGAALSKK RGRGNGGVGK DNGNLKRSGE VKETGDSEHE IHMWTERERR KKMRNMFANL  120
HALLPQLPPK ADKSTIVDEA VSYIKTLQQT LQKLQKQKLE RLQGVPIFGF EPSVITPQKL  180
AAFNSSSREA FLADQIQGSF ANLVGAVDAT NSSNLLSISR NYPVNFQTWT SSNVVLNICG  240
DAAHISICSL KKPGLFSTIC YVLEKHNIEV ISAQVSSDFT RTMYMIQAHV NGASDQFTGV  300
LPVEEVYKQA ASELMFWISS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035248.11e-130transcription factor bHLH95
TrEMBLV4UAF01e-129V4UAF0_9ROSI; Uncharacterized protein
STRINGXP_006422989.11e-130(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-54bHLH family protein