PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_609_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRF
Protein Properties Length: 596aa    MW: 63941 Da    PI: 7.1457
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_609_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24224268145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Neem_609_f_2 224 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 268
                   79****************************************985 PP
2QLQ56.86.9e-20157193137
           QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   ++FT++Q+ +L++Q+l+yKy+ an+PvP++Ll +++k
  Neem_609_f_2 157 GPFTPSQWVELEHQALIYKYITANVPVPSNLLIPLKK 193
                   59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.0E-11157193IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-14158191IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.169158193IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287224268IPR014977WRC domain
PfamPF088797.6E-21225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDFGILGLDG VVGHENGAPS QVSVNPESMS KVVGSSLVKQ ERSGSDEEDK GASKMAKTFD  60
FSATKIMPLH QATPFLRSNS SVSAENTRQQ EQMLSFSSCK SEVPFLTKSN SLVERSSQAT  120
VFPFYQQHIP SAYTRSAGYG SGSLNANMHG LFSGVRGPFT PSQWVELEHQ ALIYKYITAN  180
VPVPSNLLIP LKKSFYPFGL PYSGYASNTY GWGTFHLGYS GNTDPEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHINRGRH RSRKPVEGQT GHAASGTTNS KVAPVISSVS TSVVTSGNTS  300
VITSGGASNS LAVTQQEFKT LQPVAANPSA EALVSRVQDS RSVSMMSSTI NLKPNVSICS  360
VLKQESSQSA FGLVSSDALL NPSQRSLYLN PKSYGGSFPG FNDLETQDQQ TLRQFIDDWP  420
KDECTHSVIT WPEELKSDWT QLSMSIPMAS SEFSSSSSSP AHEKLKLSRE LDSMQVGLDV  480
NNELGESTQK QANWIPISWG SSLGGPLGEV LTNTSNNVGA CKNSSSPNIL IEGWDGSPHL  540
GSSPTGVLQK STFCSLSNSS SGSSALTDNK KTHEGASLCD DVVGSNLATS SSIPSL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4886161e-60AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466427.10.0growth-regulating factor 1
TrEMBLA0A067GGN00.0A0A067GGN0_CITSI; Uncharacterized protein
STRINGXP_006466427.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-109growth-regulating factor 1