PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5886_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 458aa MW: 51373 Da PI: 4.5585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5886_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.5e-08	287	336	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +ahn+ Er RR ++ + L ellP + +++kK s +i +A YI +L Neem_5886_f_4 287 EAHNAKERIRRMKLYATYLSLGELLPDS--GNKKKRSAPAIIARALAYIPEL 336 59***********************8..57777************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.50E-5	278	341	No hit	No description
SuperFamily	SSF47459	3.4E-10	282	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.29	284	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-9	287	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-5	288	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MSSPTLNNLN HEDHNLAFPS HDSDGIWPLL EDESVSLGIQ DYAIDHSLDP NIFHQENSSV 60 IEASINETLQ ENRIENDNDN GLSVPFEASD NPSVVLQENS ILPTQDDKSN CEWDSFLFLE 120 QENSAIAEFI TYKGLLDSWN KYHEDNSLST TLNTSKNLFP ILEECNMSLS NKSHDTSGSS 180 DPGTFVEQEN SALEPSIHKE LQKNIINYSN DDILSNYVEA TDDPWALVEE GNTSLPLENH 240 ESCRGLESSM LPEKKSSAMS APGNINKGLP EKQVNANKKK RKQSTIEAHN AKERIRRMKL 300 YATYLSLGEL LPDSGNKKKR SAPAIIARAL AYIPELEKEI EQLTLKKNNV VSTIENKQTL 360 DQNPELEHEE HKAPTVSLHE VKKGEVIIQI TSILKDEDTS FSKLLQNLES EGKSIVGVST 420 IQVSENRVCY HLHIQVNRDS LATNYLAALK ERVVSWLL

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MSSPTLNNLN HEDHNLAFPS HDSDGIWPLL EDESVSLGIQ DYAIDHSLDP NIFHQENSSV  60
IEASINETLQ ENRIENDNDN GLSVPFEASD NPSVVLQENS ILPTQDDKSN CEWDSFLFLE  120
QENSAIAEFI TYKGLLDSWN KYHEDNSLST TLNTSKNLFP ILEECNMSLS NKSHDTSGSS  180
DPGTFVEQEN SALEPSIHKE LQKNIINYSN DDILSNYVEA TDDPWALVEE GNTSLPLENH  240
ESCRGLESSM LPEKKSSAMS APGNINKGLP EKQVNANKKK RKQSTIEAHN AKERIRRMKL  300
YATYLSLGEL LPDSGNKKKR SAPAIIARAL AYIPELEKEI EQLTLKKNNV VSTIENKQTL  360
DQNPELEHEE HKAPTVSLHE VKKGEVIIQI TSILKDEDTS FSKLLQNLES EGKSIVGVST  420
IQVSENRVCY HLHIQVNRDS LATNYLAALK ERVVSWLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024951843.1	1e-151	uncharacterized protein LOC112497552
TrEMBL	A0A067EHU5	1e-160	A0A067EHU5_CITSI; Uncharacterized protein
STRING	XP_006471125.1	1e-161	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-24	bHLH family protein