PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_528_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 484aa MW: 51905.1 Da PI: 8.9907 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.1 | 4.6e-09 | 321 | 345 | 1 | 25 |
XXXXCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKk 25 e+elkrerrkq+NRe+ArrsR+RK+ Neem_528_f_2 321 ERELKRERRKQSNRESARRSRLRKQ 345 89**********************9 PP | |||||||
2 | bZIP_1 | 27.7 | 6.1e-09 | 362 | 401 | 24 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 24 KkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ae+eeL++kv++L eN +Lk+e+++l+++++k + e+ Neem_528_f_2 362 FQAETEELARKVDSLNVENVTLKSEINQLTEKSEKIRLEN 401 69********************************998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.0E-36 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.1E-15 | 127 | 191 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.7E-15 | 314 | 398 | No hit | No description |
SMART | SM00338 | 5.4E-12 | 321 | 403 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.4E-7 | 321 | 345 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.56E-17 | 326 | 393 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 328 | 343 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-6 | 363 | 401 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MGNNEDGKSS KSDKSTSPAP SDQGNVHVYP DWAALQAYYG PRVAIPPYYN SAVASGHTPH 60 PYMWGPPQPM IPPYGAPYAA IYSPGGVYAH PAVPLGSHTH NHGVLASPAA LTPLNTEAPT 120 KSSGNTDQGL GKKLKGLDGL AMSIGNGNAE SAEGGAEQGL SQSEAEGSTD GSDGNTARAN 180 QTGRKRNREG TLIAGMILIL FFSKYQISKN KRVGLVIVTF SVIDFLSTPY LICMRTDGDG 240 KTETRSSPVP AGEFNATSDK VLGTTVAPTC VPGKSVGPLL SSAMTTALEL RNPANMNAKT 300 SPTSVPQPCA VLPSETWLQN ERELKRERRK QSNRESARRS RLRKQVCSLS RSARLTFLST 360 SFQAETEELA RKVDSLNVEN VTLKSEINQL TEKSEKIRLE NATLLEKLKV AQLGHAQEIV 420 LNNVDDKRVP PVSTENLLSR VNNSGSVDRN AEEEGHHFEK NSNSGAKLHQ LLDTKPRTDA 480 VAAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 337 | 343 | RRSRLRK |
2 | 337 | 344 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444899.1 | 0.0 | common plant regulatory factor 1 isoform X1 | ||||
Refseq | XP_006491223.1 | 0.0 | common plant regulatory factor 1 isoform X1 | ||||
Refseq | XP_006491224.1 | 0.0 | common plant regulatory factor 1 isoform X1 | ||||
Swissprot | Q99089 | 1e-142 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A067H642 | 0.0 | A0A067H642_CITSI; Uncharacterized protein | ||||
TrEMBL | V4U7K8 | 0.0 | V4U7K8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491223.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444896.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 4e-49 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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