PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4529_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HSF | ||||||||
Protein Properties | Length: 440aa MW: 50970 Da PI: 6.3946 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.2 | 4.2e-36 | 42 | 134 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y+i+ed +++++isws+ +nsfvv+d+++f+ ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++i Neem_4529_f_2 42 FLTKTYDIVEDCSTNHIISWSRGNNSFVVWDPQSFSIRLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKNI 128 9****************************************************************999.........******************* PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 +r+k++ Neem_4529_f_2 129 RRRKTT 134 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.22E-35 | 37 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.4E-39 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.3E-61 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.2E-31 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MNPQGRVKEE FPEASSSSYS GGMASTAPQP MEGLHDSGPP PFLTKTYDIV EDCSTNHIIS 60 WSRGNNSFVV WDPQSFSIRL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG 120 QRHLLKNIRR RKTTQSPVSQ QALEACVEVG SFGLDGELDR LRRDKQVLMV ELVKLRQQQQ 180 NTREYLQLME QRLKRTELKQ QQMMNFMARA MQNPNFVQQL VQQKDRRKKF EEMITRKRRR 240 HIDQGPSNIK VGELGQGGDE LSFVKIEPEE YGNVADFEVS ELDKLAMEMQ GLSESQKNHD 300 EEYLEKGEEH GNKEKYTADE GFWEDFLTGD IEEQIIAGDQ EEENTRKGSE LQPSNVQNDW 360 QREHSGSCSA GTDEKRKVDD QSETLMVVAA SRIELDHIKR LPFLSARSRD RIAHAVREPF 420 SKSHPSKPAT KVWVPYEIHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 37 | 136 | 12 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 239 | RRKKFEEMITRKRRR |
2 | 235 | 239 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420034.1 | 0.0 | heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 1e-133 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A067GG69 | 0.0 | A0A067GG69_CITSI; Uncharacterized protein | ||||
STRING | XP_006420034.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-135 | heat shock transcription factor A6B |