PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4369_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | DBB | ||||||||
Protein Properties | Length: 250aa MW: 27981.6 Da PI: 7.3012 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.5 | 1.1e-07 | 5 | 34 | 6 | 35 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++++e++ fC ++ lC C H+ Neem_4369_f_1 5 CDVCDKEEASVFCSADEAALCVACDRRVHH 34 *************************99974 PP | |||||||
2 | zf-B_box | 31.7 | 3.2e-10 | 55 | 96 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C++++e ++ lfC++++ lC++C l +H++ H+ Neem_4369_f_1 55 SPLCDTCKERRALLFCQEDRAILCRECDLPIHRSneytkkHN 96 689*****************************8766666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.978 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.42E-7 | 5 | 47 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 5 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.1E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.708 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.6E-8 | 55 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.59E-10 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MKIWCDVCDK EEASVFCSAD EAALCVACDR RVHHANKLAS KHLRFSLVNP TFKDSPLCDT 60 CKERRALLFC QEDRAILCRE CDLPIHRSNE YTKKHNRFLL TGVKLSPSSC VYNPSPSSST 120 CGDATIIDGQ KRIRSSYSSV TKAKDFLDPS SSATTDNVFC KTYDQFLPFG NQDLEGNMGL 180 VSSEDLANWV PEVPPQSPQI PLHSSQNWFL NGFKESTEAK SLKVGRKWSE DGFTVPQISS 240 PPVQKTGNFW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024035077.1 | 1e-85 | LOW QUALITY PROTEIN: B-box zinc finger protein 20 | ||||
Swissprot | Q0IGM7 | 1e-61 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | A0A2N9GXM4 | 1e-84 | A0A2N9GXM4_FAGSY; Uncharacterized protein | ||||
STRING | XP_006487328.1 | 2e-84 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 4e-62 | DBB family protein |
Publications ? help Back to Top | |||
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