PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_41784_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 161aa    MW: 18108.9 Da    PI: 8.4877
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_41784_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.67.7e-2747135290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+
  Neem_41784_f_1  47 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 135
                     9**************************************99999998****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2447135IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVVVDSDEGT GGVESSAGRE LGMFEGDSII EPCEGMEFES EDAAKIFYDE YARRVGFVMR  60
VMSCRRSERD GRILARRLGC NKEGYCVSIR GKFGPVRKPR PSTREGCKAM IHVKFDKSGK  120
WVITKFVKDH NHPLVVAPRE ARQTMAFLSI ICGLYPGCFW S
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443015.11e-93protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_024043383.11e-93protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_024955241.11e-93protein FAR1-RELATED SEQUENCE 5 isoform X1
SwissprotQ9SZL83e-27FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H5QMM32e-92A0A2H5QMM3_CITUN; Uncharacterized protein
STRINGXP_006478773.14e-91(Citrus sinensis)
STRINGXP_006443015.15e-93(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39182855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-74FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]