PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_38850_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRF

Protein Properties

Length: 272aa MW: 30786.9 Da PI: 9.8801

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_38850_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.5	6.3e-25	134	176	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErHlhrgr rsrk++e Neem_38850_f_1 134 LEPGRCRRTDGKKWRCSRDVAPDQKYCERHLHRGRPRSRKPVE 176 69**************************************987 PP
2	QLQ	57.4	4.3e-20	79	112	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+++yKy++a++PvP++Ll+ + Neem_38850_f_1 79 PFTNAQWKELERQAMIYKYMMASVPVPSDLLFTV 112 8*****************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.6E-11	78	114	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.9E-13	79	112	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.957	79	114	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	133	177	IPR014977	WRC domain
Pfam	PF08879	5.0E-21	135	176	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MKMMTMLHHH NNHHRPSTSY EQIFVDVSGP TYDTGPKPST DIYHAIPSAF KTLQPFDIAT 60 AATQTAFKSP GMAASMGFPF TNAQWKELER QAMIYKYMMA SVPVPSDLLF TVTRNSSPLG 120 SGLNLIRFSN GGDLEPGRCR RTDGKKWRCS RDVAPDQKYC ERHLHRGRPR SRKPVELPAN 180 KKKSRLEPNP NTINSNDNCN NTFSPFPSRF AGTLAQYPPE AATFQSMKEQ RLVVRARMAT 240 SDAAADWDRS QQLCFDPTLS RTTPEFEFLC KF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007039182.2	2e-70	PREDICTED: growth-regulating factor 7
TrEMBL	A0A061G2T9	6e-68	A0A061G2T9_THECC; Growth-regulating factor 7, putative isoform 1
STRING	EOY23683	9e-69	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12106	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	5e-42	growth-regulating factor 7