PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_37598_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 26443.1 Da PI: 5.0869 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 58 | 100 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L Neem_37598_f_1 58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 100 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.336 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-18 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.97E-14 | 54 | 105 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 57 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-11 | 58 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MENIGEEYSQ EYQNYWETKM FWRNEEFDTW AIDETFSGYY DSSSPDGAAS SVASKNIVSE 60 RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HEQEKRIQDE IMELESGKTK 120 TNLGFDFEQE LPVLLRPKKK KIEQFYDSGG SRTSPVEVLE LRVNSMGEKT LVVSITCSKR 180 TDTMVKLCEA FEALKLKIIT ANITAVAGRL LKTAFIEVSF FSFYFPTYL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 56 | 100 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453237.1 | 1e-143 | transcription factor bHLH35 | ||||
Refseq | XP_006474281.1 | 1e-143 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 7e-82 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | V4UV05 | 1e-142 | V4UV05_9ROSI; Uncharacterized protein | ||||
STRING | XP_006453236.1 | 1e-143 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.2 | 8e-87 | bHLH family protein |