PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_3732_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 394aa MW: 44233.5 Da PI: 8.5454 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.6e-06 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H Neem_3732_f_1 64 YICEICNQGFQRDQNLQMHRRRH 86 89********************9 PP | |||||||
2 | zf-C2H2 | 16.8 | 1.9e-05 | 123 | 145 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Neem_3732_f_1 123 WVCEKCNKGYAVQSDYKAHLKTC 145 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.18E-5 | 61 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.02 | 64 | 82 | No hit | No description |
PROSITE profile | PS50157 | 10.866 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0065 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 109 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.6E-5 | 112 | 144 | No hit | No description |
SMART | SM00355 | 46 | 123 | 150 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MLENNSNNNT TASHGAPSSS SDPFTSSENN GVTNKRKRKP AGTPDPDAEV VSLSPRTLLE 60 SDRYICEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV KKREILSVLK KHFRRKHSNH 120 KQWVCEKCNK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CTMRRVQPEL 180 QTMQPACSSR TASSTSPSSD ANFSIPPPAV LQGLPMLKPD ETVFLFSGRN NQSTSDRQEH 240 NLELQLLPSS NIDATPNPHE NYATHLKLSI GSSDRGEKNE LEKLNADSSR EKNTPMAEKA 300 YAEEARQQAK RQMEMAELEF ANAKRIRQQA QGELEKAQVL KEQATKKISA TVMQITCQAC 360 KQQFQASTSM APPCDETSLA MSYMSSATTE GEGE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-18 | 121 | 171 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 9e-18 | 121 | 171 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006448065.1 | 0.0 | protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 1e-141 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | V4UAY2 | 0.0 | V4UAY2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006448065.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-136 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|