PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3715_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 364aa    MW: 40628.1 Da    PI: 9.3869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3715_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35.1e-12188234455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Neem_3715_f_1 188 DHIMAERKRRAKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKELQ 234
                    699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.173184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10188234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16188247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-11189238No hitNo description
SMARTSM003536.0E-14190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDLSAAKWLA ELGMDEYNII HQCHMDSLAE LTGKQDMTAA LGGNLKQSFS SGSYSSYPIS  60
SSKHTKTATF GAISNEKSQT SFERPPKLLK TNSWNSSTTT EHESPNHSSP TSQLLSFETS  120
NSQPTNPKRF YNYSLKPKVE TSSPRNTHPP VNLAPKNPLE RHNYAANDHH GTKRSYSSMT  180
RTPSLAQDHI MAERKRRAKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYV KELQERVKIL  240
EEQTKKRTVE SVVFVKKSQV STDDESSSCD DNSESMSDAA LPEIEARVSD NDVLIRIHCE  300
KQKGLLPKII SEVEMLHLSI VNSSVLPFGN STLDITIIAQ KNAEFRLTMK DLVKDLRLAL  360
LKFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14188237857Transcription factor MYC2
5gnj_B4e-14188237857Transcription factor MYC2
5gnj_E4e-14188237857Transcription factor MYC2
5gnj_F4e-14188237857Transcription factor MYC2
5gnj_G4e-14188237857Transcription factor MYC2
5gnj_I4e-14188237857Transcription factor MYC2
5gnj_M4e-14188237857Transcription factor MYC2
5gnj_N4e-14188237857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171178TKRSYSSM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466576.11e-169transcription factor bHLH18-like
TrEMBLA0A067GGE01e-161A0A067GGE0_CITSI; Uncharacterized protein
STRINGXP_006466576.11e-169(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-70bHLH family protein