PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_36731_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 143aa MW: 16961.3 Da PI: 10.5544 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.3 | 1.2e-16 | 8 | 54 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k+ + Neem_36731_f_1 8 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKKL 54 79****************************************98665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.5E-10 | 4 | 60 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.817 | 6 | 55 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-14 | 8 | 55 | No hit | No description |
Pfam | PF00170 | 7.3E-14 | 8 | 53 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.16E-21 | 8 | 62 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-12 | 8 | 55 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 11 | 26 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MIERTVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR LEEENERLRK RKKLLFFSQA 60 CPHFVPSPFY LSRTISDYLE NLVWHKHSSY IPSSSFSVNP IHPAPSDSVF MSWRRCCHLL 120 HHRSQDISFA EQHQPHSNLV SVG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 53 | LRKRKKL |
2 | 48 | 52 | RKRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469708 | 3e-33 | AM469708.2 Vitis vinifera contig VV78X277820.7, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600989.1 | 2e-27 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Refseq | XP_021600990.1 | 2e-27 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A251IQ68 | 4e-26 | A0A251IQ68_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011841m | 6e-27 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 3e-16 | ABA-responsive element binding protein 3 |