PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_36020_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 321aa    MW: 36089.6 Da    PI: 6.2647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_36020_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13145191455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++N++f  L  llP +     kK +Ka+iL   ++Y+k+Lq
  Neem_36020_f_1 145 DHVIAERKRREKLNQRFIALSALLPGL-----KKTDKASILGDSIKYLKQLQ 191
                     6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17145203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-13146195No hitNo description
SMARTSM003531.7E-15147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEDSAFFHLD YSLDGFDFQS FSSDEDYCRS DNNTGSYIEA CDAVVERPAK QLKTNSWNSC  60
TTDQRITPKA SPASSQIISF ENPISSPAIS QQVFGKIEAA GYHVNINSSS FISKGSYEDK  120
FCSTKYVPDP KRGSSVTRST THAQDHVIAE RKRREKLNQR FIALSALLPG LKKTDKASIL  180
GDSIKYLKQL QERVKTLEEQ AAKKTMESMI VVKKCQIYTD DETSSSDENF DNQSNQYLPE  240
IEARVSDRDV LIRIHCDKNK GRIANILSEI EKLHLAVISS NVLPFGNSTI DVTVVAQMDA  300
ELEMTVKDLM NNLRLALRKF I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154ERKRRE
2150155RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466387.11e-129transcription factor bHLH25-like
RefseqXP_006466388.11e-129transcription factor bHLH25-like
TrEMBLV4SKN61e-124V4SKN6_9ROSI; Uncharacterized protein
STRINGXP_006466387.11e-128(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-68bHLH family protein