PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28142_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 27699 Da PI: 4.6642 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.8e-19 | 29 | 83 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k Neem_28142_f_1 29 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 83 56779*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.4 | 1.8e-38 | 30 | 121 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L +l++ Neem_28142_f_1 30 NKRRFSDEQIRSLELMFENETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILQANYNNLASRFEALKKEKQALVIQLQK 121 79************************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.39E-19 | 10 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-16 | 27 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-16 | 29 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-19 | 30 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.00E-14 | 34 | 86 | No hit | No description |
PRINTS | PR00031 | 9.6E-6 | 56 | 65 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.6E-6 | 65 | 81 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-15 | 85 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLDGGEYTPA AEPFTCMNDL TTPRKKKCKN KRRFSDEQIR SLELMFENET RLEPRKKLQL 60 ARELGLQPRQ VAIWFQNKRA RWKSKQLERD YSILQANYNN LASRFEALKK EKQALVIQLQ 120 KMNDLLQNKP REQSQCCGQR EAVNSIDSEL DNGDTAKCES EVKPSLSLDR SEQRLGVLSD 180 DDSSIKAEYF GLEEEPNLMT MVEPAESSMT SPEDWGNFES DGLFDQSSSE YQWWDFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444770.1 | 1e-136 | homeobox-leucine zipper protein ATHB-7 | ||||
Refseq | XP_006491341.1 | 1e-136 | homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 2e-81 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A067HEZ9 | 1e-134 | A0A067HEZ9_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P083 | 1e-134 | A0A2H5P083_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U1T1 | 1e-134 | V4U1T1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491341.1 | 1e-135 | (Citrus sinensis) | ||||
STRING | XP_006444770.1 | 1e-135 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 7e-84 | homeobox 7 |
Publications ? help Back to Top | |||
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