PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_279_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 323aa    MW: 34943.7 Da    PI: 5.0898
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_279_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.6e-17234269134
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                   C++Cg+++  Tp++Rrgp+g+++LCnaCGl+++ +g
  Neem_279_f_3 234 CTHCGVSSksTPMMRRGPSGPRSLCNACGLFWANRG 269
                   *******99***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.1326297IPR010399Tify domain
SMARTSM009795.1E-116297IPR010399Tify domain
PfamPF062001.9E-136596IPR010399Tify domain
PROSITE profilePS510178.869127170IPR010402CCT domain
PfamPF062033.4E-10127157IPR010402CCT domain
SMARTSM004011.2E-16228281IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-12228279No hitNo description
PROSITE profilePS5011410.462228287IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15232275IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-15233280No hitNo description
PfamPF003209.8E-15234269IPR000679Zinc finger, GATA-type
PROSITE patternPS003440234261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYGHSQPMNI TSQMSGGADD DDVSVGADNH HLTYDPHSAL ENGVVVVEDV AHDSGYAASG  60
SELANSSQLT LSFRGQVYVF DSVTPDKVQA VLLLLGGCEL SSGPQGMEVI PQRGISEYPG  120
RCTQPQRAAS LDRFRQKRKE RCFDKKVRYS VRQEVALRFI DLIKGNLIRE GVETDRCFDM  180
KILGCGLSVE VDHMIGMQRN KGQFTSSKKS EGGALSWSNA QDSGQDDSPS ETSCTHCGVS  240
SKSTPMMRRG PSGPRSLCNA CGLFWANRGA LRDLSKKTQD HSLTPAEQGE AEANDSDCGT  300
AAHTDNELVS LSNDDDSALI SER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433799.10.0GATA transcription factor 25 isoform X1
SwissprotQ9LRH68e-83GAT25_ARATH; GATA transcription factor 25
TrEMBLV4T6G41e-180V4T6G4_9ROSI; Uncharacterized protein
STRINGXP_006433799.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.23e-74GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]