PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_27920_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 388aa MW: 43801.2 Da PI: 7.8713

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_27920_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6e-05	184	200	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C+ksF+r nL+ Neem_27920_f_1 184 FSCPVCTKSFNRYNNLQ 200 89***********9997 PP
2	zf-C2H2	15.5	5.1e-05	311	333	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Neem_27920_f_1 311 FMCRKCGKPFAVKGDWRTHEKNC 333 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.3E-4	184	199	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.09E-6	297	331	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-4	298	331	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MTDPYSNLFT GWFNFKPLHP NYSHFSSYST PHTYTNNITS SNSLIFQTQN FPPPPPSSPP 60 LKEALPLINC LSPRRQLEED QQEISSSSTE EDKINSNKDE SLIFSSTAEA ADDDVDPETV 120 TVALHIGLPN PSSNLSSRIS PPVDVTADKE EVVNLASGYS LDRLNKGQYW IPTPSQILIG 180 PTQFSCPVCT KSFNRYNNLQ TGIYEDHQEA ALQSAKNNLL HNAYVGTRIS VQKRTRLFKR 240 NPTLHMWGHG SQYRKGPDSL RGTQPTAMLR LPCYCCTQGC KHNIDHPRAK PLKDFRTLQT 300 HYKRKHGIKP FMCRKCGKPF AVKGDWRTHE KNCGKIWYCI CGSDFKHKRS LKDHIKAFGH 360 GHAAMGIECF EEDDEPASEI EHDGDSSM

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MTDPYSNLFT GWFNFKPLHP NYSHFSSYST PHTYTNNITS SNSLIFQTQN FPPPPPSSPP  60
LKEALPLINC LSPRRQLEED QQEISSSSTE EDKINSNKDE SLIFSSTAEA ADDDVDPETV  120
TVALHIGLPN PSSNLSSRIS PPVDVTADKE EVVNLASGYS LDRLNKGQYW IPTPSQILIG  180
PTQFSCPVCT KSFNRYNNLQ TGIYEDHQEA ALQSAKNNLL HNAYVGTRIS VQKRTRLFKR  240
NPTLHMWGHG SQYRKGPDSL RGTQPTAMLR LPCYCCTQGC KHNIDHPRAK PLKDFRTLQT  300
HYKRKHGIKP FMCRKCGKPF AVKGDWRTHE KNCGKIWYCI CGSDFKHKRS LKDHIKAFGH  360
GHAAMGIECF EEDDEPASEI EHDGDSSM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482890.1	1e-167	zinc finger protein WIP2-like
Refseq	XP_024042271.1	1e-167	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-119	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S8ADE9	1e-165	A0A1S8ADE9_CITLI; C2H2-type zinc finger family protein
STRING	XP_006482890.1	1e-166	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-123	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]