PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25795_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | SBP | ||||||||
Protein Properties | Length: 189aa MW: 19739.8 Da PI: 10.465 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 141.5 | 2.1e-44 | 95 | 170 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC++hsk+pvv+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+ Neem_25795_f_1 95 RCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPVVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKP 170 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.5E-37 | 88 | 157 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.693 | 93 | 170 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-42 | 93 | 174 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-33 | 96 | 169 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MELGSGSFTT ESGESSTSLH GLKFGQKIYF EDVGSSSSSG GNNNNNNNII QVNNNPSGGS 60 ASGVSSSSGS GRKVRGGGGG AGGVVQTGGG GQPPRCQVEG CKVDLSDAKA YYSRHKVCSM 120 HSKSPVVIVA GLEQRFCQQC SRFHLLPEFD QGKRSCRRRL AGHNERRRKP PPGSVLANRH 180 GRLSSSVTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-33 | 96 | 169 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017977243.1 | 9e-70 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 2e-47 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2R4K371 | 2e-72 | A0A2R4K371_LITCN; Squamosa promoter binding-like protein | ||||
STRING | EOY09456 | 2e-70 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-45 | squamosa promoter binding protein-like 9 |