PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_25573_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10096.3 Da PI: 6.52 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.2e-09 | 6 | 51 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+ +l+ +a + + ++ +W+ ar +g g+t +++k ++ + Neem_25573_f_1 6 TWTAKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKRHYEM 51 7********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.432 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-7 | 3 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-6 | 6 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.97E-7 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-5 | 6 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.8E-13 | 7 | 60 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MASNSTWTAK QNKLFENALA IYDKDTPDRW HNLARAVGGK TVEEVKRHYE MLVEDVSKIE 60 AGEIPLPNYK KIGDSNNKGY SSYMEANNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-31 | 2 | 73 | 6 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102066.1 | 2e-48 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-35 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | W9RQB4 | 5e-47 | W9RQB4_9ROSA; DnaJ homolog subfamily C member 2 | ||||
STRING | XP_010102066.1 | 9e-48 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 7e-38 | RAD-like 6 |