PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21486_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 214aa MW: 22723.8 Da PI: 5.1864

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21486_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137	6.6e-43	50	149	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la Neem_21486_f_1 50 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLA 144 7********************************************************************************************** PP DUF260 96 llkee 100 ++++ Neem_21486_f_1 145 KAQAD 149 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.228	49	150	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-43	50	147	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MENYEVAGAT TATAANSTIT NSTAGSSSPP PSSSSPNSAP NPPPPVVISP CAACKILRRR 60 CADKCVLAPY FPPTEPAKFT IAHRVFGASN IIKFLQELPE SQRADAVSSM VYEASARIRD 120 PVYGCAGAIC QLQKQVNELQ AQLAKAQADL VNMQCQQANL AALLCMEMSK SPQPNSPESV 180 DNFIITSPGS PQQGNPSCFL DDNNLSGPLW PLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	42	157	3	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	42	157	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488170.1	1e-112	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A067G403	1e-110	A0A067G403_CITSI; Uncharacterized protein
STRING	XP_006488170.1	1e-111	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-61	LOB domain-containing protein 1