PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1942_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25752.3 Da PI: 9.9757 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.5 | 2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++ey+s Neem_1942_f_1 9 KRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 92.1 | 1e-30 | 71 | 164 | 1 | 94 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yqk+ g++l++++++++q+ ++kLk+ +++L++ +R+++GedL++L ++eL+ Leq++ +++++R++K++++++q+++ +kk ++l+e++ ++ Neem_1942_f_1 71 YQKTLGVDLWSTHYAKMQETYRKLKEINNKLRKDIRQRMGEDLDDLGIEELRGLEQKMTAAVTNVRERKYHVIKTQTDTYKKKVRNLEERHGNI 164 7899999**********************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.548 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-37 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.76E-41 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-21 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.87 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRGKIEIKR IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TGKFHEYISP 60 TTSTKKMFDQ YQKTLGVDLW STHYAKMQET YRKLKEINNK LRKDIRQRMG EDLDDLGIEE 120 LRGLEQKMTA AVTNVRERKY HVIKTQTDTY KKKVRNLEER HGNILLDFET RYDDPHFGLV 180 DNGDYQSAVA LANGASNLYA FRMQQANLQQ TAGVFGSGDL TLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 2e-15 | 1 | 59 | 1 | 59 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425563.1 | 1e-150 | floral homeotic protein DEFICIENS | ||||
Refseq | XP_006466888.1 | 1e-150 | floral homeotic protein DEFICIENS-like | ||||
Swissprot | Q003J2 | 1e-131 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A067FUM1 | 1e-150 | A0A067FUM1_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5Q0C9 | 1e-150 | A0A2H5Q0C9_CITUN; Uncharacterized protein | ||||
STRING | XP_006466888.1 | 1e-149 | (Citrus sinensis) | ||||
STRING | XP_006425563.1 | 1e-149 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5261 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-78 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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