PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19110_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 278aa MW: 30126.5 Da PI: 7.5592

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19110_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.3e-11	159	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Neem_19110_f_1 159 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 206 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-18	153	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.56E-10	153	210	No hit	No description
PROSITE profile	PS50888	15.828	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-18	155	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	159	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDPPLVNESS FSAANPSSYS LAEIWPYPIN GRGAAEVGFR VRNMRRGFGE SSGHRDGSAE 60 ESTVTEQSGG GGCGRKRRDL SSEDESSKIV STTSSANDLN DSNGKRMKVS GSKNENGGSK 120 TEVEACSAAG SKPAESSKPS ELPKDYIHVR ARRGQATDSH SLAERARREK ISERMKILQD 180 LVPGCNKVIG KALVLDEIIN YIQSLQRQVE FLSMKLEAVN SRMSLTPTIE GFHPKDLGAQ 240 SFDATGMMFG AQTAREFAQG SQTEWLHMQV GGSFERAT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476705.1	1e-180	transcription factor bHLH79
Swissprot	Q9LV17	9e-96	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A067FUM3	1e-178	A0A067FUM3_CITSI; Uncharacterized protein
STRING	XP_006476705.1	1e-180	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	6e-88	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]