PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19050_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRF
Protein Properties Length: 391aa    MW: 43626.6 Da    PI: 7.8201
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19050_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.28.2e-2568112145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Neem_19050_f_1  68 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 112
                     79****************************************986 PP
2QLQ62.51.1e-21642137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Neem_19050_f_1  6 SPFTVSQWQELEQQALIFKYMVAGLPVPPDLVLPIQK 42
                    89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-12642IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.178742IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-15741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76268112IPR014977WRC domain
PfamPF088794.8E-2169111IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGMRASPFTV SQWQELEQQA LIFKYMVAGL PVPPDLVLPI QKSFESISHR FFHHPTMGYC  60
SFYGKKVDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMH RGRNRSRKPV ESQTMTQSSS  120
TVTSLTVTGA SGGTGSFQNL PLHAFGSPQG TASGANQSHY HMDSISYGIP SKDYRNFLSF  180
CSVQSRLLGP VSSRIDHGLR SVLTYLQGLK PEIGEHSFLS EASGSNRGIQ MDSPLDNTWP  240
QMQSRLTSLP NSKSNNTTIL QNDYPRQSYF GSEFASGEHG KPEGRSLRPF FDEWPKTRDS  300
WSGLEDERSN HTSFSTTQLS ISIPMASSDF SATSSQSPHD IVIIWQNFEC TARDCRDENC  360
TETTGIFFPE SGKVTMSKPF SSGILTGVDD V
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824889e-66FQ382488.1 Vitis vinifera clone SS0ABG55YD19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437422.10.0growth-regulating factor 4
RefseqXP_006484683.10.0growth-regulating factor 4-like
RefseqXP_006484684.10.0growth-regulating factor 4-like
TrEMBLA0A067EAQ20.0A0A067EAQ2_CITSI; Uncharacterized protein
STRINGXP_006484683.10.0(Citrus sinensis)
STRINGXP_006484684.10.0(Citrus sinensis)
STRINGXP_006437422.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-44growth-regulating factor 5