PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1792_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26470.6 Da PI: 4.7094 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.7 | 4e-20 | 34 | 77 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +nk qvtfskRr+g++ KA EL+vLC+aev +i+fs++gk+ Neem_1792_f_1 34 LQNKNSLQVTFSKRRTGLFSKAMELCVLCGAEVGIIVFSPSGKI 77 6799999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-31 | 24 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.684 | 24 | 84 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-26 | 25 | 112 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-32 | 25 | 93 | No hit | No description |
PRINTS | PR00404 | 1.3E-19 | 26 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-21 | 35 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 46 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 61 | 82 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSSSISNTNN GGNNDNHNTK KTTRGRQKIE IKKLQNKNSL QVTFSKRRTG LFSKAMELCV 60 LCGAEVGIIV FSPSGKIFVV GHPDFDTILN RYLGENQYEQ AAAVPSVEQH NREYEEALIE 120 LEMEKTRGKI IEEEKEKNNE GKAWWEESID GMGIEELEEY VKAMNKLRSK VESRVNEMMM 180 MNEYLMPNNI NITNREDGFG NVVSSSNNEE ISVDGGCTVA DFDFGENFSI IHNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3kov_B | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3kov_I | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3kov_J | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_A | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_B | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_C | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_D | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_I | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
3p57_J | 6e-15 | 25 | 118 | 1 | 87 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422729.2 | 1e-88 | agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A2H5P8W2 | 4e-87 | A0A2H5P8W2_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U9K6 | 3e-87 | V4U9K6_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006487056.1 | 7e-88 | (Citrus sinensis) | ||||
STRING | XP_006422729.1 | 5e-88 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-28 | AGAMOUS-like 62 |