PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_17366_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | Dof | ||||||||
Protein Properties | Length: 385aa MW: 42203.4 Da PI: 7.1841 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.4 | 3.3e-38 | 83 | 143 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvPvGgg+rk k++s Neem_17366_f_1 83 NHQALKCPRCDSLNTKFCYYNNYNLSQPRYFCKSCRRYWTKGGVLRNVPVGGGCRKTKRNS 143 57899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.3E-33 | 85 | 141 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-27 | 85 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.441 | 87 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 89 | 125 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MPWFVNPDAV SLQFPFRPTL ITAQSLSSSG QFAKFIIIRA CFTAIPSTYI FHLYGMQDIH 60 SIGGGRLYGG GGDRRLRPHP HQNHQALKCP RCDSLNTKFC YYNNYNLSQP RYFCKSCRRY 120 WTKGGVLRNV PVGGGCRKTK RNSKAKASAD SSSAQTQTTA QRERKTNSHS SSESSSTLTV 180 TNNTNVEAVS VHSSSSVSNV LSTMNDNSTK FFGHANGNSN NNEPAPGFEP ATNALLEQGS 240 SDCGIFSEIG SFTSLITSSS EALPFGFSNL LNAQQSLEHV QHSHEQWQQQ QEQQKMVSVS 300 SMGGGGGDEE LKIQDMTSGF LDQTVQIELS ALQDRSNNGG FGSLDWHASG DQGLFDLPNA 360 VDHASYWSQS TTQWTDQDHP SLYLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 71 | GGRLYGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024956323.1 | 1e-125 | dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A067FHN4 | 1e-122 | A0A067FHN4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5Q4Y9 | 1e-122 | A0A2H5Q4Y9_CITUN; Uncharacterized protein | ||||
STRING | XP_006485709.1 | 1e-125 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-35 | OBF binding protein 4 |