PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_15620_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 32671 Da PI: 4.4317 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.2 | 9.3e-06 | 175 | 218 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r RR++i ++ +eL +l+P +++ ae+ + A +Y+k Lq Neem_15620_f_2 175 IAARERRRKITEKTQELGKLIPGgH------RMNTAEMFQAASKYVKFLQ 218 56799*****************955......9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.56 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-10 | 172 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-9 | 173 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-7 | 174 | 222 | No hit | No description |
SMART | SM00353 | 4.0E-8 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MALSFCSNWE SLQHLNSEIQ SCGSDGVDGG GSSFQQPPQV PQLVEDCFTL NNINGFDIPE 60 TLINPILQPA EDLFYSNLLP YFSSPSDSLT SLSPEIFPLE DFDPYQLPKR QKSYPPPDNF 120 LYGYLPNPPL APEFFPEVVL APPADFPVPP PVTFSSGKTE NVKKQNGTSL SVQSIAARER 180 RRKITEKTQE LGKLIPGGHR MNTAEMFQAA SKYVKFLQAQ VKILQLMGLK QEGKEQADHG 240 EELQALLASP IIQEKLYSEE KCLISKEFAE SLANDPEIQS KPVIVEGIDQ LLRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468467.1 | 1e-105 | transcription factor bHLH52 | ||||
TrEMBL | A0A067GDB5 | 1e-104 | A0A067GDB5_CITSI; Uncharacterized protein | ||||
STRING | XP_006468467.1 | 1e-105 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-34 | bHLH family protein |