PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1537_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 340aa MW: 39335.6 Da PI: 9.1266

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1537_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	75	126	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR+++N ++ Lr+llP+a + kKls ++ ++v+Y+ +Lq Neem_1537_f_2 75 KLYHNASERDRRKKMNGLYSALRSLLPHA--DQTKKLSIPATISRVVKYLPELQ 126 567***********************6..48888************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.011	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.62E-11	74	130	No hit	No description
SuperFamily	SSF47459	7.46E-16	74	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-11	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-13	75	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-11	79	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MCALTPPTFA NFGWPSKEYP ITYHHHQLQQ QEEDYYSYRE TTDQDQQYLI SQPQIRLDRS 60 ASFSANTGND AVVKKLYHNA SERDRRKKMN GLYSALRSLL PHADQTKKLS IPATISRVVK 120 YLPELQQQVK RLEEKKEELL SKISTQHDDL FNIVQQRKQK QVVVGSNLFS VSASKLTERE 180 ILIHISTYKT NNRPLLSEIL LHLQDQDPSL LLLSASSFES SGGRVFYSLH LQAERAHGLD 240 CEVITDKLKS LYEKREEGML FPSNFNLDML KTHIYCHVDA TCTYELAISY QSRARLPRQL 300 PSQKQHVKWS AWYAILSRQQ PARELPLDST RELNKLAQSA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006494391.2	2e-84	transcription factor ORG2
TrEMBL	A0A067DMC3	1e-82	A0A067DMC3_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QLA5	1e-82	A0A2H5QLA5_CITUN; Uncharacterized protein
STRING	VIT_08s0007g05300.t01	3e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	3e-38	bHLH family protein