PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_12632_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 156aa MW: 18283.6 Da PI: 4.7516 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.5 | 1.6e-33 | 2 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pG+ F+Ptdee+v yL kk+++ + e +++ik +++y++eP++L+ + ++++++wyf++ +kky++g++ nr++ g+W++tg+ + Neem_12632_f_1 2 LEPGMVFDPTDEEIV-SYLVKKASSASeGERFDFIKYIELYQHEPSELRrLAQDSGHEKWYFYTLLQKKYQQGTNINRQVPGGFWQKTGSPSIIR 95 579************.677777666653666799**************9445566888************************************* PP NAM 94 skkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + g + k++L++yk+ + ++ekt+W+m+ey l Neem_12632_f_1 96 NDAGDIIAKKTSLTYYKKdqTPDQSEKTNWLMKEYML 132 *99999**********7532556788*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 34.756 | 2 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-30 | 2 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-16 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MLEPGMVFDP TDEEIVSYLV KKASSASEGE RFDFIKYIEL YQHEPSELRR LAQDSGHEKW 60 YFYTLLQKKY QQGTNINRQV PGGFWQKTGS PSIIRNDAGD IIAKKTSLTY YKKDQTPDQS 120 EKTNWLMKEY MLAKNQTPDN PNDEESEMVM FMVFIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-16 | 2 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-16 | 2 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-16 | 2 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-16 | 2 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swm_B | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swm_C | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swm_D | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_A | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_B | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_C | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_D | 1e-16 | 2 | 132 | 20 | 145 | NAC domain-containing protein 19 |
4dul_A | 1e-16 | 2 | 132 | 17 | 142 | NAC domain-containing protein 19 |
4dul_B | 1e-16 | 2 | 132 | 17 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437371.1 | 3e-37 | uncharacterized protein LOC18043989 isoform X1 | ||||
Refseq | XP_024042455.1 | 2e-37 | uncharacterized protein LOC18043989 isoform X2 | ||||
TrEMBL | V4TLA9 | 7e-36 | V4TLA9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006437371.1 | 1e-36 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM29602 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 9e-28 | NAC domain containing protein 52 |