PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_12632_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 156aa    MW: 18283.6 Da    PI: 4.7516
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_12632_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.51.6e-3321321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l pG+ F+Ptdee+v  yL kk+++ +  e +++ik +++y++eP++L+  + ++++++wyf++  +kky++g++ nr++  g+W++tg+   + 
  Neem_12632_f_1   2 LEPGMVFDPTDEEIV-SYLVKKASSASeGERFDFIKYIELYQHEPSELRrLAQDSGHEKWYFYTLLQKKYQQGTNINRQVPGGFWQKTGSPSIIR 95 
                     579************.677777666653666799**************9445566888************************************* PP

             NAM  94 skkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                     +  g  +  k++L++yk+  +  ++ekt+W+m+ey l
  Neem_12632_f_1  96 NDAGDIIAKKTSLTYYKKdqTPDQSEKTNWLMKEYML 132
                     *99999**********7532556788*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.7562156IPR003441NAC domain
SuperFamilySSF1019413.01E-302153IPR003441NAC domain
PfamPF023652.3E-164131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MLEPGMVFDP TDEEIVSYLV KKASSASEGE RFDFIKYIEL YQHEPSELRR LAQDSGHEKW  60
YFYTLLQKKY QQGTNINRQV PGGFWQKTGS PSIIRNDAGD IIAKKTSLTY YKKDQTPDQS  120
EKTNWLMKEY MLAKNQTPDN PNDEESEMVM FMVFIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-16213217142NO APICAL MERISTEM PROTEIN
1ut4_B1e-16213217142NO APICAL MERISTEM PROTEIN
1ut7_A1e-16213217142NO APICAL MERISTEM PROTEIN
1ut7_B1e-16213217142NO APICAL MERISTEM PROTEIN
3swm_A1e-16213220145NAC domain-containing protein 19
3swm_B1e-16213220145NAC domain-containing protein 19
3swm_C1e-16213220145NAC domain-containing protein 19
3swm_D1e-16213220145NAC domain-containing protein 19
3swp_A1e-16213220145NAC domain-containing protein 19
3swp_B1e-16213220145NAC domain-containing protein 19
3swp_C1e-16213220145NAC domain-containing protein 19
3swp_D1e-16213220145NAC domain-containing protein 19
4dul_A1e-16213217142NAC domain-containing protein 19
4dul_B1e-16213217142NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437371.13e-37uncharacterized protein LOC18043989 isoform X1
RefseqXP_024042455.12e-37uncharacterized protein LOC18043989 isoform X2
TrEMBLV4TLA97e-36V4TLA9_9ROSI; Uncharacterized protein
STRINGXP_006437371.11e-36(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2960222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.19e-28NAC domain containing protein 52