PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1256_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 347aa    MW: 39079 Da    PI: 5.9486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1256_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.7e-13171217455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++N++f  L  l+P +     kK +Ka+iL   ++Y+k+Lq
  Neem_1256_f_1 171 DHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQ 217
                    6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17171232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-18171231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-11171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-13172221No hitNo description
SMARTSM003539.1E-16173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEISPSKWIS EMGMEDSAFF HQYQMNSLDC PLDGFNFQSF TTEGYHPRSS YNSTGQHIDA  60
SDAGVERPAK QLETNSWNSC TSERITPKAS PASSQIISFE NSISSPAVPQ QVYGLDCTMN  120
PKIEAAGYHG NFDWSSSISQ GSYENHFRST KCMPETKRVG SVTRSPSLAQ DHVIAERKRR  180
EKLNQRFIAL SALVPGLKKT DKASILGDSI KYLKQLQERV KTLEEQATRK TIESMTFVKK  240
SQVYIDDETS SSDENFDGQS NQYLPEIEVR VSDRDVLIRI HCEKNKGSIA NILCEIEKLR  300
LAVVSSNIFP FGNSTIDITV VAQMEVEFEM TIKDLVKNLR LALEKLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12171226863Transcription factor MYC2
5gnj_B1e-12171226863Transcription factor MYC2
5gnj_E1e-12171226863Transcription factor MYC2
5gnj_F1e-12171226863Transcription factor MYC2
5gnj_G1e-12171226863Transcription factor MYC2
5gnj_I1e-12171226863Transcription factor MYC2
5gnj_M1e-12171226863Transcription factor MYC2
5gnj_N1e-12171226863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
2176181RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632371.11e-141transcription factor bHLH18-like
TrEMBLA0A2C9UQF51e-140A0A2C9UQF5_MANES; Uncharacterized protein
STRINGcassava4.1_010938m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-73bHLH family protein