PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11875_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17381.4 Da PI: 7.7922 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.6 | 1.6e-36 | 16 | 105 | 11 | 100 |
DUF260 11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Neem_11875_f_4 16 ICVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAE 105 6*************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.638 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-36 | 16 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDIHKLMTSS SGLGDICVEK CVLAPYFPPT EPYKFTIAHR VFGASNIIKF LQELPESQRA 60 DAVSSMVYEA NARIRDPVYG CAGAICHLQK QVSELQAQLA KAQAELVTMQ CQQRNLIAVI 120 CMEMAQAQAP AAFWLKLGGS LDMMKEEKLI ELRKKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-36 | 17 | 113 | 22 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-36 | 17 | 113 | 22 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144484 | 3e-38 | AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence. | |||
GenBank | AC152818 | 3e-38 | AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436214.2 | 9e-71 | LOB domain-containing protein 1 | ||||
Refseq | XP_006485928.1 | 9e-71 | LOB domain-containing protein 1 isoform X2 | ||||
Swissprot | Q9LQR0 | 6e-59 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A067E155 | 2e-69 | A0A067E155_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NZ66 | 2e-69 | A0A2H5NZ66_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VB10 | 6e-70 | V4VB10_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006485928.1 | 3e-70 | (Citrus sinensis) | ||||
STRING | XP_006436214.1 | 9e-71 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-51 | LOB domain-containing protein 1 |