PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11737_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 31434.8 Da PI: 8.5505 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.7 | 2.6e-07 | 134 | 155 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Neem_11737_f_1 134 FCDICGKGFKRDANLRMHMRAH 155 6*******************99 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 218 | 241 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C +C+ k+F s+Lk+H +++ Neem_11737_f_1 218 FSCDKCNkKRFAVLSDLKSHHKNC 241 89*******************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.06E-6 | 129 | 158 | No hit | No description |
SMART | SM00355 | 0.0017 | 133 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 133 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 135 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 180 | 213 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 130 | 218 | 239 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MSNPHESRSV RREYPLENSD PGTPLTNLSA VRTRMDSLQQ FLSQSVNSNT LISQHQMNMV 60 SSEIASAIHQ IIVNGAALLA CSQQPIPPST DPQNPDVASV SEKTEQVSEK TECELDCDIM 120 EIDAVELLAE HIHFCDICGK GFKRDANLRM HMRAHGNEYK TPEALAKPDK GNEPGRKTRF 180 SCPYEGCNRN KKHKKFRPLK SVVCVKNHFK RSHCPKMFSC DKCNKKRFAV LSDLKSHHKN 240 CGESRWKCSC GTSFSRKDKL FGHVALFEGH MPEAVYGNM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428216.1 | 1e-156 | zinc finger protein STOP1 homolog | ||||
Refseq | XP_006464195.1 | 1e-156 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q9C8N5 | 3e-77 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | V4SW99 | 1e-155 | V4SW99_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464195.1 | 1e-155 | (Citrus sinensis) | ||||
STRING | XP_006428216.1 | 1e-155 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-79 | C2H2 family protein |