PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10520_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bHLH | ||||||||
Protein Properties | Length: 579aa MW: 64997.3 Da PI: 6.8342 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 392 | 436 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka+ L + eY++sL Neem_10520_f_1 392 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASLLVSTREYLSSL 436 8899********************97.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.92E-12 | 385 | 440 | No hit | No description |
PROSITE profile | PS50888 | 15.224 | 387 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-16 | 388 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-14 | 391 | 453 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 392 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-13 | 393 | 442 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MDTVFSDEIA RANFLQSVMQ TFGCTYICLW SYHQQSNCLL FSDGCYHEEN NQPISSSGSL 60 ARRFFDDYCQ SVIIPVVEYE YNGCKWMPSV YNCSSRVPGL AFKNCQEYVE LNESELHRLA 120 YTESQRLFYQ TAVFMARNTG EIELGFSGMT PVRDDFMLMK LSTFNTNKVL DQLPFHDFHT 180 CNLNQINLET EIRNLFQKDL SSQLSPVSHE LATGRPSSSS SSLRSLSIDS PTEYSNSLLF 240 NIPTTSHIPE TTLKDVPPMQ PLIPSTTSPT QEAMQAFAQL QNIQLPTQET EQAVMTRAIL 300 AVLTSPSSST SSSQAQVRLP PRYSAVSPRP SAFKNYNLAL APTTSQMRST STSTSLRAQS 360 MLKRAIAYYT RLNTARRQYM VANRPTSTQL HHMISERKRR EKLNESFQAL RSLLPPGTKK 420 DKASLLVSTR EYLSSLKAQV DDLSRRNQIL EAQLLPGAKA AANEETSASS SSSSNERVEV 480 TVTCVPESTS EWRIVDLGVT VRGECRTLDL VTSILEFLKQ VQNVSLMSIE ANTQISESSS 540 SNHVIILRLR IEGNEWEESA FKEAVRRLVA LLVTSDNNK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 395 | 400 | ERKRRE |
2 | 396 | 401 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475471.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
Refseq | XP_024033940.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A2H5QCH9 | 0.0 | A0A2H5QCH9_CITUN; Uncharacterized protein | ||||
STRING | XP_006451491.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 5e-56 | bHLH family protein |