PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10479_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | CAMTA | ||||||||
Protein Properties | Length: 368aa MW: 41219.9 Da PI: 6.415 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 189.7 | 2.8e-59 | 23 | 138 | 4 | 118 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e ++rwl++ ei++iL n++k+++++e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+v+vl+cyYah+een++fqrr Neem_10479_f_1 23 EaQHRWLRPAEICEILCNYQKFHIASEPPDKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRR 117 449******************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cyw+Le++l +iv+vhylevk Neem_10479_f_1 118 CYWMLEQDLMHIVFVHYLEVK 138 ******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 84.854 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.3E-83 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.1E-53 | 23 | 137 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MADRGGSYAA IGPRLDMQQL QMEAQHRWLR PAEICEILCN YQKFHIASEP PDKPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK KDGKTVREAH EKLKVGSVDV LHCYYAHGEE NENFQRRCYW 120 MLEQDLMHIV FVHYLEVKGN KTNVGGIRGT NEVMSSPGNH SSLTFGFPGN HTKAASGITD 180 STSPTSTLTS SCEDADSGYD AEDSHHASSR SYSHFELPQT GNAPTFEKMD SGLSYSSVLN 240 RSSGLSPDSP EVRSSVPGDH VSHVGVGPRA NHDNYFTIES QKTLGLGSWE EVLEHCNKEY 300 DNVPSHANTK CILQKDNIVY DDLVANETAV KEDPGSSLLF QLDWQAGGLV QFLLLNQLYL 360 KIRKPLVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007304 | 2e-32 | AP007304.2 Lotus japonicus genomic DNA, chromosome 4, clone: LjB10F10, BM1099, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006487645.1 | 1e-179 | calmodulin-binding transcription activator 2 isoform X2 | ||||
Refseq | XP_015388622.1 | 1e-179 | calmodulin-binding transcription activator 2 isoform X1 | ||||
Swissprot | Q6NPP4 | 9e-88 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A2H5QEH7 | 1e-177 | A0A2H5QEH7_CITUN; Uncharacterized protein | ||||
STRING | XP_006487645.1 | 1e-178 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25587 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 2e-87 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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