PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10479_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CAMTA
Protein Properties Length: 368aa    MW: 41219.9 Da    PI: 6.415
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10479_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1189.72.8e-59231384118
            CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                     e ++rwl++ ei++iL n++k+++++e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+v+vl+cyYah+een++fqrr
  Neem_10479_f_1  23 EaQHRWLRPAEICEILCNYQKFHIASEPPDKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSVDVLHCYYAHGEENENFQRR 117
                     449******************************************************************************************** PP

            CG-1  98 cywlLeeelekivlvhylevk 118
                     cyw+Le++l +iv+vhylevk
  Neem_10479_f_1 118 CYWMLEQDLMHIVFVHYLEVK 138
                     ******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143784.85417143IPR005559CG-1 DNA-binding domain
SMARTSM010767.3E-8320138IPR005559CG-1 DNA-binding domain
PfamPF038598.1E-5323137IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MADRGGSYAA IGPRLDMQQL QMEAQHRWLR PAEICEILCN YQKFHIASEP PDKPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK KDGKTVREAH EKLKVGSVDV LHCYYAHGEE NENFQRRCYW  120
MLEQDLMHIV FVHYLEVKGN KTNVGGIRGT NEVMSSPGNH SSLTFGFPGN HTKAASGITD  180
STSPTSTLTS SCEDADSGYD AEDSHHASSR SYSHFELPQT GNAPTFEKMD SGLSYSSVLN  240
RSSGLSPDSP EVRSSVPGDH VSHVGVGPRA NHDNYFTIES QKTLGLGSWE EVLEHCNKEY  300
DNVPSHANTK CILQKDNIVY DDLVANETAV KEDPGSSLLF QLDWQAGGLV QFLLLNQLYL  360
KIRKPLVD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073042e-32AP007304.2 Lotus japonicus genomic DNA, chromosome 4, clone: LjB10F10, BM1099, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487645.11e-179calmodulin-binding transcription activator 2 isoform X2
RefseqXP_015388622.11e-179calmodulin-binding transcription activator 2 isoform X1
SwissprotQ6NPP49e-88CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A2H5QEH71e-177A0A2H5QEH7_CITUN; Uncharacterized protein
STRINGXP_006487645.11e-178(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2558723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.22e-87Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]