PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10334_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 479aa    MW: 53720.9 Da    PI: 6.0858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10334_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13294341254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     r ++ + Er+RR++i+++++ Lr+l+Pk +      K++ a+iL  AveYI++L
  Neem_10334_f_3 294 RSKNLISERKRRNKIKDGLFALRTLVPKiS------KMDRAAILGDAVEYIREL 341
                     6677789*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-1311150IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.53E-17284354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-13290346No hitNo description
PROSITE profilePS5088815.713292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-18294360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11294341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-16298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146880.00726336371No hitNo description
CDDcd048736.03E-4414474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MKELERAVEW LRPFVDSNTW DYCIVWKLID EPSSGGSDTG NYDHVKIKEE GGEEQKLTPF  60
CRDVHLMHPA RTKACEALAQ FPSFMALYSG IHGEVLTTNQ PKWLSFANDS ESSPSHESVG  120
TRVLIPVFGG LIELFAAKHI PKDQNIVELV VAQSNASLEH KFAPEGSYAN VSLDEQCVDP  180
SIKENLHNFA SAMQLLTFIP RIQVVPAAAH PSYEGLSSVS NPSIEHPSFD SSCCYVAQNM  240
PLKQSVSKSC GSKRPKCKNN ALKEEMGLVL DCNKNEVVKD NKGGSQRLGE ENNRSKNLIS  300
ERKRRNKIKD GLFALRTLVP KISKMDRAAI LGDAVEYIRE LKQKVEELQD ELKENEEDCQ  360
KDNAELKSSK SDEIDEGTRY MPPSEHNKTS PEGGKKAITE VEVEVNQIDK RDFLVKLFCE  420
HKRGGFAKLM EAINSLELQV LDANITTFND KVLNILRVEA HKENIRPKKL RDSLIELTG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484318.10.0transcription factor bHLH90
RefseqXP_024041036.10.0transcription factor bHLH90
TrEMBLA0A2H5N8140.0A0A2H5N814_CITUN; Uncharacterized protein (Fragment)
TrEMBLA0A2H5N9R60.0A0A2H5N9R6_CITUN; Uncharacterized protein
STRINGXP_006484318.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-66bHLH family protein