PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001280195.1
Common NamePmDAM3
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26021.6 Da    PI: 4.8091
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001280195.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.86.9e-241659851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr gi+KKA ELSvLC+ +vav+ifs tgkl++yss
  NP_001280195.1 16 ARQVTFSKRRRGIFKKAAELSVLCESKVAVVIFSATGKLFDYSS 59
                    69****************************************96 PP
2K-box37.41.1e-13981722299
           K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + L+++ ++L+++   ++ edLe+L++ eLq+Leq +++sl+++ ++K+el +++i  l +k  el e+n++L++ ++
  NP_001280195.1  98 KELEEKSHQLRQQ---MKAEDLEELNFDELQKLEQLVDTSLSRVIETKEELRMSEIMALERKGAELVEANNQLKQTVM 172
                     5567777777765...99********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.59161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-26374IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-22323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-211657IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.29286179IPR002487Transcription factor, K-box
PfamPF014869.3E-1190171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMRKKIKIKK IDCLPARQVT FSKRRRGIFK KAAELSVLCE SKVAVVIFSA TGKLFDYSSS  60
SIKDVIESYK AHKNGVKKSD EPSVELQLEN ENHIGLSKEL EEKSHQLRQQ MKAEDLEELN  120
FDELQKLEQL VDTSLSRVIE TKEELRMSEI MALERKGAEL VEANNQLKQT VMLSGGNTGP  180
TLMDPERLND NVGGGGEEEG MSSESAISTT CNSALSLSLG DDSDDVTLSL ELGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-16172172MEF2C
5f28_B9e-16172172MEF2C
5f28_C9e-16172172MEF2C
5f28_D9e-16172172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001280195.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5763520.0AB576352.1 Prunus mume PmDAM3 mRNA for dormancy associated MADS-box 3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280195.11e-170MADS-box protein JOINTLESS-like
SwissprotQ9FUY63e-64JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLG1UE211e-168G1UE21_PRUMU; Dormancy associated MADS-box 3
STRINGXP_008219271.11e-146(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-54AGAMOUS-like 24
Publications ? help Back to Top
  1. Sasaki R, et al.
    Functional and expressional analyses of PmDAM genes associated with endodormancy in Japanese apricot.
    Plant Physiol., 2011. 157(1): p. 485-97
    [PMID:21795580]
  2. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]