PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00775.1.p
Common NameMIMGU_mgv1a017741mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 436aa    MW: 45796.9 Da    PI: 8.3884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00775.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-054365123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  Migut.O00775.1.p 43 FVCEVCNKGFQRDQNLQLHRRGH 65
                      89*******************88 PP
2zf-C2H211.50.00095119141123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H + +
  Migut.O00775.1.p 119 WKCDKCSKKYAVQSDWKAHSKIC 141
                       58*****************9876 PP
3zf-C2H2110.0013149167523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg+ Fsrk+n+++H   +
  Migut.O00775.1.p 149 DCGTLFSRKDNFTTHRAYC 167
                       9**************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.0E-64265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.53E-74265No hitNo description
SMARTSM003550.0214365IPR015880Zinc finger, C2H2-like
PfamPF121718.1E-54365IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.974365IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SMARTSM0035527084114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4107140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.53E-7114139No hitNo description
SMARTSM00355150119139IPR015880Zinc finger, C2H2-like
PRINTSPR012177.7E-9191203No hitNo description
PRINTSPR012177.7E-9207223No hitNo description
PRINTSPR012177.7E-9229241No hitNo description
PRINTSPR012177.7E-9312329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MKDSTVSGDS SPAKKKRNLP GMPDPEAEVI ALSPKTLLTT NRFVCEVCNK GFQRDQNLQL  60
HRRGHNLPWK LRQRSNEDIK KRVYVCPESS CVHHNPLRAL GDLTGIKKHF CRKHGEKKWK  120
CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRKDNF TTHRAYCDVL AEENAKPESA  180
NAAAPNVDVP SSPLLSASVA PPPSPLPTSA APPPPTSAAS PLPTSAAPPP PPSPLPPPSP  240
PPAVLPTDVV PPSLRDNNSE ETPPLTNLTA SCSSNSSTNG SSSSNVFASV FATSSSSRNS  300
HYQTTEFTDL FRATTHDAAP PPPPPSSEPI IALCLSMNHQ GQYSPAMQPA LSATALLQKA  360
AQMGPASSNA SLSLGLGLGL GLGLGCDGGS GLKELMLGTP SVFGPKQTTL DLLGLGMAAA  420
GGTPDCINSL LSSLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33115179367Zinc finger protein JACKDAW
5b3h_F4e-33115179367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00775.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022870585.11e-162protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-141IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A022QZM20.0A0A022QZM2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]