PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00612.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 533aa    MW: 58483.6 Da    PI: 5.4265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00612.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-183986148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WTt Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Migut.O00612.1.p 39 KGPWTTAEDSILVDYVKRHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 86
                      79******************************************9986 PP
2Myb_DNA-binding51.23e-1692135146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  Migut.O00612.1.p  92 KGAFTSEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.623486IPR017930Myb domain
SuperFamilySSF466892.55E-3038133IPR009057Homeodomain-like
SMARTSM007173.2E-153888IPR001005SANT/Myb domain
PfamPF002496.4E-163986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-244093IPR009057Homeodomain-like
CDDcd001672.15E-114186No hitNo description
PROSITE patternPS0017505463IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129426.02387141IPR017930Myb domain
SMARTSM007171.4E-1691139IPR001005SANT/Myb domain
PfamPF002494.0E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2594140IPR009057Homeodomain-like
CDDcd001674.04E-1294135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MGHSTTTESE DGVLSADSPL SNDGENSGGS SNGNALLKKG PWTTAEDSIL VDYVKRHGEG  60
NWNAVQKHSG LSRCGKSCRL RWANHLRPNL KKGAFTSEEE RLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP DLCLHALPEN QHHGSPGIYD GDKGCHDIMQ  180
INGYETPDFM FDNFNISPYT SEFPGISATV STSNGFAPPQ FCTFAPQIPK CAQGTDAPMP  240
DYEGGAPIEA PPFHKNQIES YASKMSPFGL YFPYEPDPTQ KMFPFGVDKD SHFMSNGISS  300
ASEHFTCNQK SELPSLQYQE SGFGAWDSTP ESFDSLVQSP MLGPPSSHWP SPGSSGLLED  360
LLYEAKALSK SDNQSSDWAT SSNISHGDVK DSPALEKGSA GFKDYRDHPS SPSGNSIGSI  420
FNGYTSAGTF RSSLEENKSV RRVKSEVFDQ SWILDCESKK NPNNYLDYST PEASLGSYWV  480
EQNASYWKQQ GCPPTDAIGA LMGEDTKNTS IWGLSSCCWN NMPAVCQMSD IH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-32371405107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00612.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831718.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_012831719.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_012831720.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A059PRV50.0A0A059PRV5_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14059713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.33e-95myb domain protein 33