PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N02608.1.p
Common NameLOC105958882, MIMGU_mgv1a012247mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YC
Protein Properties Length: 257aa    MW: 28944.1 Da    PI: 5.9353
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N02608.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC231.7e-07172229966
             NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlha 66 
                       + e++ d +  ++P+ r+ +i+k+++   +is ea  l+ ka e f+  +t  ++ +a
  Migut.N02608.1.p 172 EAEEKGDNALYTFPMNRVSRIIKSENPDVKISQEAVFLINKASEKFLQLFTRDAYAQA 229
                       568888999999***********9766667****************877776666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.75E-12124241IPR009072Histone-fold
PfamPF008084.5E-11183243IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.4E-11184242IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAKKQVPAAK ANKNSKTPTK IKSKAKKSAT ISTKRNPKIR SRITKTGDDD ASSEETEVLA  60
AVPSSSAESQ NDDDVLESSE ADEVERIEER SSSDEDVSEE RKKGKMENVK NKGKKTSRKH  120
EDEAEEDERS SDDENEEQKR PKIIGTKGKM EDVKNKGKRK STKVEDDGGE SEAEEKGDNA  180
LYTFPMNRVS RIIKSENPDV KISQEAVFLI NKASEKFLQL FTRDAYAQAF IENKNYTAYN  240
HLCMHFFFFL VFTLLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N02608.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838341.10.0PREDICTED: nucleolin 2
TrEMBLA0A022RB790.0A0A022RB79_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-16nuclear factor Y, subunit C10