PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.N02066.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 144aa MW: 16261.1 Da PI: 4.6347

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.N02066.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	133.2	8.3e-42	6	98	5	97
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 + lPianv+++mkk+lP akis++ ke +q+c+sefi fvt+ea+++c++e+rkt++gdd++wal++lGf++y e++ yl+++re+e+e+ Migut.N02066.1.p 6 ELSLPIANVGQMMKKILPPSAKISREGKERMQQCASEFICFVTGEAAHRCRKENRKTVTGDDICWALSSLGFDNYSETMLRYLENFREFERER 98 5679**************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-41	4	116	IPR009072	Histone-fold
SuperFamily	SSF47113	9.83E-34	6	123	IPR009072	Histone-fold
Pfam	PF00808	1.3E-21	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.2E-12	36	54	No hit	No description
PRINTS	PR00615	2.2E-12	55	73	No hit	No description
PRINTS	PR00615	2.2E-12	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MNDEIELSLP IANVGQMMKK ILPPSAKISR EGKERMQQCA SEFICFVTGE AAHRCRKENR 60 KTVTGDDICW ALSSLGFDNY SETMLRYLEN FREFERERAN QNNKVNNNCS EEKDEEISYG 120 DNTTSTPSFD FGILERGGTS LAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-31	9	93	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.N02066.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012850788.1	3e-78	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	6e-42	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A022QJW4	5e-79	A0A022QJW4_ERYGU; Uncharacterized protein
STRING	Migut.N02066.1.p	1e-103	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-36	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Migut.N02066.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]