PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.N01727.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 351aa MW: 38694.2 Da PI: 9.2959 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.7 | 8.3e-20 | 44 | 134 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 +W+ +e+ aLi+a+r+++ +lrrg+l++++W+ev++ + ++++qC++k+e+l+kry+++ +++ + + +s++++f+ ++ Migut.N01727.1.p 44 CWSPDETVALIDAYRDKWYSLRRGNLRANHWQEVADDVasrCPASPPKTAVQCRHKMEKLRKRYRAEIQRSAAHggVRRYTSSWVHFHIMH 134 7*************************************5432234489******************99999888556888999*****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.3E-21 | 43 | 136 | No hit | No description |
PROSITE profile | PS50090 | 6.202 | 45 | 104 | IPR017877 | Myb-like domain |
SMART | SM00595 | 4.9E-11 | 52 | 141 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSTTLSPSSH DDDHHHHHIP TATLALPSSA AATSSASRRL PPPCWSPDET VALIDAYRDK 60 WYSLRRGNLR ANHWQEVADD VASRCPASPP KTAVQCRHKM EKLRKRYRAE IQRSAAHGGV 120 RRYTSSWVHF HIMHAMEKGP NPTPPSSDDD DEEEENDHRN SIKRINDLYN HNQKGGFAAP 180 DPPETNGSTS GFRIKIPGRV TSAGGGVPTV AKVYSKFDEM GSGGGPNPNY PNPRFTNYTT 240 GVNGAAASSK VSRDGFVGKR AAAEPSSKNK ADSGVGELVS AIQGLGEGFM RMEKVKMDMV 300 RQIEEMRMEM ELKRTEMILE SEQRIVEAFA KSISERNTKR AKRNSNTPEC * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.N01727.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831461.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2G9HZ49 | 0.0 | A0A2G9HZ49_9LAMI; Transcription factor GT-2 | ||||
STRING | Migut.N01727.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8028 | 23 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 1e-39 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.N01727.1.p |